Overview

Raw Beans is a quality control tool for assessment of data coming off mass spectrometry DDA (Data-Dependent Acquisition) experiments. It is an identification-free tool that can process either Thermo RAW or mzML formats. The results is a HTML report the provides some key data for a quick impression of the quality of the data itself and detect some obvious issues. 

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ProteoWizard msconvert.exe - The location of the msconvert.exe file in the ProteoWizard installation folder (this value needs to be inserted only ones, after that, the software will remember the last location you inserted), for example: C:\Program Files\ProteoWizard\ProteoWizard 3.0.10738\msconvert.exe

Input Directory - The input folder which your input files (as explained above) are located in.

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• It is best if the input files will be located on your local PC, it will be faster and also will avoid network problems.