Overview
Raw Beans is a quality control tool for assessment of data coming off mass spectrometry DDA (Data-Dependent Acquisition) experiments. It is an identification-free tool that can process either Thermo RAW or mzML formats. The results is a HTML report the provides some key data for a quick impression of the quality of the data itself and detect some obvious issues.
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- Install MSFileReader_x86_Standalone.zip (only the 32-bit is supported, it is best not to install both 32 and 64 bit).
- Run it on windows.
- Note that the Proteowizard msconvert.exe field is empty, otherwise it will run msconvert.
- If you are running from source code, you will need to install python3 32-bit as well in order to use the 32-bit dll.
Windows Software
For windows, there is an executable that opens this view:
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- It is best if the input files will be located on your local PC, it will be faster and also will avoid network problems.